一．专著
（一）主编
1.卜文俊 郑乐怡，2001 《中国动物志》昆虫纲 第二十四卷 -半翅目：毛唇花蝽科、细角花蝽科、花蝽科。科学出版社。北京。
2.刘国卿卜文俊，2009，《河北动物志》半翅目：异翅亚目。中国农业科学技术出版社， 北京。
3.卜文俊 刘国卿，2018，《秦岭昆虫志》半翅目：异翅亚目。世界图书出版公司，西安。
二. 译著：
卜文俊 郑乐怡 2007 《国际动物命名法规》第四版。xx+135页。科学出版社， 北京。
三、 代表性论文(通讯作者）
1.
1.Zhen Ye; Yahui Zhen; Jakob Damgaard; Pingping Chen; Lin Zhu; Chenguang Zheng; Wenjun Bu, 2018, Biogeography and diversification of Holarctic water striders: Cenozoic temperature variation, habitat shifting and multiple intercontinental dispersals. Systematic Entomology, 43(1): 19~30 。
2.Zhen Ye; Juanjuan Yuan; Min Li; Jakob Damgaard; Pingping Chen; Chenguang Zheng; Haibin Yu; Siying Fu; Wenjun Bu, 2018, Geological effects influence population genetic connectivity more than Pleistocene glaciations in the water strider Metrocoris sichuanensis (Insecta: Hemiptera: Gerridae) . Journal of Biogeography, 45(3): 690~701
3.Huaxi Liu; Zhen Ye; Jingyu Liang; Shujing Wang; Wenjun Bu, 2018, Niche divergence of two closely related Carbula species (Insecta: Hemiptera: Pentatomidae) despite the presence of a hybrid zone. Ecological Entomology, 43(2): 204~214.
4.Huanhuan Yang, Teng Li, Kai Dang, Wenjun Bu，2018, Compositional and mutational rate heterogeneity in mitochondrial genomes and its effect on the phylogenetic inferences of Cimicomorpha (Hemiptera: Heteroptera). BMC Genomics 19: 264.
5.Zhen Ye, Juanjuan Yuan, Min Li, Jakob Damgaard, Pingping Chen, Chenguang Zheng, Haibin Yu, Siying Fu, Wenjun Bu, 2018,Geological effects influence population genetic connectivity more than Pleistocene glaciations in the water strider Metrocoris sichuanensis (Insecta: Hemiptera: Gerridae). Journal of Biogeography , 45(3):1-12.
6.Junli Xue, Xin Yu, Haiguang Zhang, Xin Chen, Wenjun Bu, 2017, Population genetics and ecological niche modeling shed light on conservation of the island endemic damselfly Pseudolestes mirabilis (Odonata, Pseudolestidae), HYDROBIOLOGIA,790(1): 273–286
7.Ye, Zhen; Zhen, Yahui; Zhou, Yanyan; Bu, Wenjun , 2017, Out of Africa: Biogeography and diversification of the pantropical pond skater genus Limnogonus Stal, 1868 (Hemiptera: Gerridae). Ecology and evolution. 7 (3): 793-802.
8.Haiguang Zhang, Mimhua Lv, Wenbo Yi, Weibing Zhu and Wenjun Bu, 2017, Species diversity can be overestimated by a fixed empirical threshold: insights from DNA barcoding of the genus Cletus (Hemiptera: Coreidae) and the meta-analysis of COI data from previous phylogeographical studies. Molecular Ecology Resources (2017) 17 , 314–323
9.Li Teng, Jie Yang, Yinwan Li, Ying Cui, Qiang Xie, Wenjun Bu & David M. Hillis, 2016, A Mitochondrial Genome of Rhyparochromidae (Hemiptera: Heteroptera) and a Comparative Analysis of Related Mitochondrial Genomes. Scientific Reports | 6:35175
10.Yan-hui Wang, Ying Cui, David Redei, Petr Banar, Qiang Xie, Pavel Stys, Jakob Damgaarde, Ping-ping Chen, Wen-bo Yi, Ying Wang, Kai Dang, Chuan-ren Li, and Wen-jun Bu, 2016, Phylogenetic divergences of the true bugs (Insecta: Hemiptera: Heteroptera), with emphasis on the aquatic lineages: the last piece of the aquatic insect jigsaw originated in the Late Permian/Early Triassic. Cladistics 390–405.
11.Ye Zhen, Pingping Chen & Wenjun Bu, 2016, Terrestrial mountain islands and Pleistocene climate fluctuations as motors for speciation: A case study on the genus Pseudovelia (Hemiptera: Veliidae). Scientific Reports. 6, 33625;
12.Danli Zhang, Zhen Ye, Kazutaka Yamada, Yahui Zhen, Chenguang Zheng and Wenjun Bu, 2016, Pleistocene sea level fluctuation and host plant habitat requirement influenced the historical phylogeography of the invasive species Amphiareus obscuriceps (Hemiptera: Anthocoridae) in its native range. BMC Evolutionary Biology 16:174
13.Zhu Geng-Ping , Zhen Ye, Juan Du, Dan-Li Zhang, Ya-hui Zhen, Chen-guang Zheng, Li Zhao, Min Li & Wen-Jun Bu, 2016, Range wide molecular data and niche modeling revealed the Pleistocene history of a global invader (Halyomorpha halys). Scientific Reports, 6:23192.
14.Yu Xin, Junli Xue, Matti HÄMÄLÄINEN, Yang Liu & Wenjun Bu, 2015, A revised classification of the genus Matrona Selys,1853 using molecular and morphological methods (Odonata: Calopterygidae). Zoological Journal of the Linnean Society, 174 , 473–486.
15.Ye, Zhen; Zhu, Gengping; Chen, Pingping; Zhang, Danli; Bu, Wenjun, 2014, Molecular data and ecological niche modelling reveal the Pleistocene history of a semi-aquatic bug (Microvelia douglasi douglasi) in East Asia. Molecular Ecology , 23(12): 3080-3096.
16.Li, Teng; Hua, Jimeng; Wright, April M.; Cui, Ying; Xie, Qiang; Bu, Wenjun; Hillis, David M., 2014, Long-branch attraction and the phylogeny of true water bugs (Hemiptera: Nepomorpha) as estimated from mitochondrial genomes. BMC Evolutionary Biology (2014), 14: 99.
17.Cui, Ying、Xie, Qiang、Hua, Jimeng、Dang, Kai、Zhou, Jianfu、Liu, Xiaoguang、Wang, Gang、Yu,Xin、Bu, Wenjun, 2013 Phylogenomics of Hemiptera (Insecta: Paraneoptera) based on mitochondrial genomes. Systematic Entomology, 38, 233–245.
18.Gao, Cuiqing、Kondorosy,Elod、Bu, Wenjun, 2013, A review ofthe genus Arocatus from palaearctic andoriental regions (Hemiptera:Heteroptera: Lygaeidae)，Raffles Bulletin of Zoology, 61(2), 687-704.
19.YU Xin & Wenjun BU, 2011. A preliminary phylogenetic study of Megapodagrionidae with focus on the Chinese genera Sinocnemis Wilson & Zhou and Priscagrion Zhou & Wilson (Odonata: Zygptera). Hydrobiologia, 665: 195-203
20.Xie Qiang, Jinzhong Lin, Yan Qin, Jianfu Zhou, Wenjun Bu, 2011 Structural diversity of eukaryotic 18S rRNA and its impact on alignment and phylogenetic reconstruction. Protein & Cell 2011, 2(2): 161–170.
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